Details of the available projects

Theoretical/Computational Molecular Science

Project Title: Modeling and simulation of biomolecular machines  
Associate Professor: Kei-ichi OKAZAKI  
https://sites.google.com/view/okazakigroup-en/home 
 

Details of the project:

1) Structural modeling and molecular dynamics simulation of motor proteins, transporter proteins  
2) Statistical inference of reaction coordinates   
 

References:

Nat. Commun. 10, 1742 (2019)  
J. Chem. Phys. 156, 154108 (2022)  
J. Phys. Chem. Lett. 15, 725–732 (2024). 

Required skills:

Experience in Linux commands and programming. Basic knowledge of protein structure and physical chemistry.